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[DOI] [Google Scholar] 108.Noctor G., Arisi A.C.M., Jouanin L., Valadier M.H., Roux Y., Foyer C.H

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Here is an example command to do that: anvi-estimate-metabolism -c contigs-db \ --output-modes modules_custom \ --custom-output-headers module,module_name,module_substrates,module_intermediates,module_products,pathwise_module_completeness,stepwise_module_completeness The resulting output file will have a column for each item in the --custom-output-headers list, including one each for the substrates (input compounds), products (output compounds) and intermediates